Differences

This shows you the differences between two versions of the page.

--- dosimetry:commissioning_guide:commissioning_guide [2015/07/02 15:33] – created dpatenaude
+++ dosimetry:commissioning_guide:commissioning_guide [2021/07/29 18:23] (current) – external edit 127.0.0.1
@@ Line 5: / Line 5: @@
 As described in IAEA-TECDOC-1583, "Commissioning is one of the most important parts of the entire QA programme for both the RTPS and the planning process. Commissioning involves testing of system functions, documentation of the different capabilities and verification of the ability of the dose calculation algorithms to reproduce measured dose calculations."  As part of the new customer startup and implementation process, our customer support staff will assist with the commissioning process. However, this guide is provided to act as a manual to describe how to perform this commissioning process for the astroid dosimetry app so that end users can be familiar and comfortable with the process.
-An //astroid machine model// is a collection of several data types that are used as input parameters to allow dose calculation and other provided functions the flexibility to compute accurate results for a variety of proton radiation treatment machine types and models. The major components of a machine model include the following: //double_scattering_machine_spec//, //double_scattering_option// and //proton_material_properties//. Additional information, including off-axis-ratio data in the form of an //image2//, may also be necessary depending upon the specific machine type being commissioned.
+An //astroid machine model// is a collection of several data types that are used as input parameters to allow dose calculation and other provided functions the flexibility to compute accurate results for a variety of proton radiation treatment machine types and models. The major components of a machine model include the following: //double_scattering_machine_spec//, //double_scattering_option//, //pbs_machine_spec// and //proton_material_properties//. Additional information, including off-axis-ratio data in the form of an //image2//, may also be necessary depending upon the specific machine type being commissioned.
 ===== Purpose =====
@@ Line 21: / Line 21: @@
 The data required to fully commission a proton treatment machine with the astroid dosimetry app can be split in several major categories:
-  - [[commissioning_guide:commissioning_guide#Machine Geometry|Machine Geometry]]
+  - [[dosimetry:commissioning_guide:commissioning_guide#Machine Geometry|Machine Geometry]]
-  - [[commissioning_guide:commissioning_guide#Device Information|Device Information]]
+  - [[dosimetry:commissioning_guide:commissioning_guide#Device Information|Device Information]]
-    - [[commissioning_guide:commissioning_guide#Apertures|Apertures]]
+    - [[dosimetry:commissioning_guide:commissioning_guide#Apertures|Apertures]]
-    - [[commissioning_guide:commissioning_guide#Range Compensators|Range Compensators]]
+    - [[dosimetry:commissioning_guide:commissioning_guide#Range Compensators|Range Compensators]]
-  - [[commissioning_guide:commissioning_guide#Dose Model|Dose Model]]
+  - [[dosimetry:commissioning_guide:commissioning_guide#Dose Model|Dose Model]]
+This data is primarily captured within the dosimetry app's facility model. The facility model definition and schema is described in the [[http://docs.apps.dotdecimal.com/|Dosimetry App Manifest Documentation]] as the named type "facility". An empty {{ :dosimetry:commissioning_guide:sample_facility.json |sample facility model}} is provided as a json file to aid with initial setup and commissioning of a site's facility model. Please note that this sample file provides descriptions of all required model information without providing any default values. __**Users must start from this empty file**__ when creating a new machine / equipment model as it ensures that no unintended values are erroneously included into the model.
 ==== Machine Geometry ====
@@ Line 52: / Line 53: @@
 ==== Dose Model ====
+=== SOBP / Double Scattering Models ===
 Due to the physical construction of SOBPs within most machine beamlines, the properties and parameters of a treatment beam typically vary with energy (range) and modulation selection. Due to this variability, astroid allows machines to be defined as a list of "options", where each option contains all the required dose model data as well as the limits over which it can be used.
@@ Line 67: / Line 70: @@
       * **penumbral_source_size**: The penumbral_source_size is the virtual source of the proton scattered beam. It is used to compute the penumbra contribution in the patient in the dose algorithm (it is not used to compute the SOBP parameters)
       * **source_size_on_track**: The source_size_on_track determines, given a stop_angle (see below), how much of the proton beam passes through one track segment and its neighbor
-      * **sdm**:The modulation width is converted to a stop_angle (0-sum(theta[NSTEP] at which the beam is turned off to only pass and pull-back proton bragg peaks that create the desired SOBP.  Theta_stop = F(sdm, M). sdm is the conversion function used by IBA in CONVALGO
+      * **sdm**:The modulation width is converted to a stop_angle (0-sum(theta[NSTEP])) at which the beam is turned off to only pass and pull-back proton bragg peaks that create the desired SOBP.  Theta_stop = F(sdm, M). sdm is the conversion function used by IBA in CONVALGO
       * **mod_correction**: Polynomial coefficients allowing non-linear correction of modulus (cm)
       * **steps**: List of double scattering steps defined for the machine where a step is an angular subdivision of a circular range-shifter (track)
@@ Line 76: / Line 79: @@
       * **bcm**: Weights representing current modulation over the RM wheel
       * **pristine_peak**: List of depth & relative dose value pairs [Depth, % dose] for the pristine peak at the given max_range
+=== PBS Models ===
+Since the Astroid Dosimetry App is primarily concerned with computing proton dose, the Astroid PBS machine model (//pbs_machine_spec//) consists of only a small set of parameters and machine geometric information. Other data, such as device mounting locations and snout extension limits for example, are used at a higher level and such information should have already been used to develop the input data necessary to use the Dosimetry App Dose Calculation Functions. The required beam data is described below:
+  * **deliverable_energies**:  List of treatment energies that this machine is actually capable of delivering
+    * For continuous energy machines, this list should be left as an empty list
+    * For discrete energy machines, this list should contain each energy that can be obtained from the machine
+  * **modeled_energies**: List of modeled treatment energies with each item containing the full data necessary to describe the treatment spots
+    * Modeled energies provide Astroid with the actual data necessary to compute dose from a PBS beam
+    * Not all deliverable energies need to be modeled and Astroid will use an interpolation/extrapolation approach to compute the necessary data when deliverable energies are not specifically modeled; however, such estimation approaches are accurate when Bragg Peak shapes are not changing significantly between provided energies, as such users are encouraged to provide additional model energies if their delivery equipment produces variable shape Bragg Peaks
+    * The determination of which energies and how many to model is left to the user, as this is unique to each treatment machine and users should test the accuracy of the dose calculations for a range of energies before beginning clinical use
+  * **source_rotation_function**: Function that maps the beam source rotation to the gantry angle
+    * Use 0 for gantry independent scanning magnet system
+  * **sad**: The scanning magnet source-to-axis distances for the IEC BEV X and Y directions
+  * **aperture_sad**: The "apparent" SAD for aperture construction
+  * **halo_sigma_sq_function**: A simplified spot size function to use for verification dose calculations (this function is not used at this time)
+== Deliverable Energy ==
+Each deliverable energy is specified simply by its energy value (MeV), range/R90 distance (mm), and optionally the R80 range (mm).
+== Modeled Energy ==
+Each modeled energy is specified by its energy value (MeV), range/R90 distance (mm), optionally the R100 range (mm), the bragg peak width W80 (mm), the in-air central axis spot size/sigma at the isocenter plane, and the pristine peak data (Depth dose curve in Gy(RBE)mm^2/Gp for an infinite broad beam at infinite source distance). Note that many of Astroid's PBS energy layer calculation functions utilize the provided W80 value to compute appropriate energy layer spacing.
 <WRAP center round important 60%>
@@ Line 133: / Line 160: @@
    "max_mod": 95.490,
    "max_range": 95.490,
-   "min_range": 74.90000000000001,
+   "min_range": 74.9000,
    "mod_correction": [ 0.0, 0.0, 0.0, 1.0, 0.0 ],
    "name": "B3",
@@ Line 140: / Line 167: @@
       "outside_domain_policy": "always_zero",
       "samples": [
-         [ -14.51000000000001, 32.88120 ],
+         [ -14.5100, 32.88120 ],
-         [ -13.51000000000001, 32.90570 ],
+         [ -13.5100, 32.90570 ],
-         [ -12.51000000000001, 32.91630 ],
+         [ -12.5100, 32.91630 ],
          .
          .
          .
          [ 92.490, 98.46320 ],
-         [ 93.490, 99.98260000000001 ],
+         [ 93.490, 99.9826000 ],
          [ 94.490, 97.19420 ],
          [ 95.490, 90.0 ],
-         [ 96.490, 75.52679999999999 ],
+         [ 96.490, 75.5267999 ],
          [ 97.490, 60.90950 ],
          [ 98.490, 45.77150 ],
@@ Line 165: / Line 192: @@
    },
    "sdm": [
-.410, 36.7770, -4.19010, 0.31260, -0.009599999999999999, 9.91750, 0.71850
+.410, 36.7770, -4.19010, 0.31260, -0.009599999, 9.91750, 0.71850
    ],
    "source_size_on_track": 12.0,
@@ Line 193: / Line 220: @@
       .
       {
-         "dR": 89.20520000000001,
+         "dR": 89.20520000,
          "theta": 260.990,
          "weight": 0.76350
       },
       {
-         "dR": 94.46290000000001,
+         "dR": 94.462900,
          "theta": 266.60,
          "weight": 0.64430
       },
       {
-         "dR": 99.74160000000001,
+         "dR": 99.74160000,
          "theta": 272.510,
          "weight": 0.58110
@@ Line 213: / Line 240: @@
 </code>
-==== Example 2: Acrylic Proton Material ====
+==== Example 2: PBS Machine ====
+<code json pbs_machine.json>
+{
+    "aperture_sad": [2310.0, 1930.0],
+    "deliverable_energies": [],
+    "halo_sigma_sq_function":
+    {
+        "a": 0.00078,
+        "b": -0.34,
+        "c": 65.0
+    },
+    "modeled_energies": [
+    {
+         "energy": 91.0,
+         "pristine_peak": {
+            "outside_domain_policy": "always_zero",
+            "samples": [
+               [ 0.10, 137.340 ],
+               [ 0.30, 141.930 ],
+               [ 0.50, 143.860 ],
+               [ 0.70, 145.110 ],
+               [ 0.90, 146.240 ],
+               [ 1.10, 147.0 ],
+               [ 1.30, 147.790 ],
+               [ 1.50, 148.610 ],
+               [ 1.70, 149.360 ],
+               [ 1.90, 150.040 ],
+               [ 2.10, 150.70 ],
+               [ 2.30, 151.260 ],
+               [ 2.50, 151.760 ],
+               [ 2.70, 152.140 ],
+               [ 2.90, 152.750 ],
+               [ 3.10, 153.190 ],
+               [ 3.30, 153.490 ],
+               [ 3.50, 153.950 ],
+               [ 3.70, 154.330 ],
+               [ 3.90, 154.620 ],
+               [ 4.10, 154.970 ],
+               [ 4.30, 155.390 ],
+               [ 4.50, 155.790 ],
+               [ 4.70, 156.090 ],
+               [ 4.90, 156.490 ],
+               [ 5.10, 156.860 ],
+               [ 5.30, 157.090 ],
+               [ 5.50, 157.390 ],
+               [ 5.70, 157.710 ],
+               [ 5.90, 157.940 ],
+               [ 6.10, 158.160 ],
+               [ 6.30, 158.280 ],
+               [ 6.50, 158.540 ],
+               [ 6.70, 158.780 ],
+               [ 6.90, 158.990 ],
+               [ 7.10, 159.30 ],
+               [ 7.30, 159.530 ],
+               [ 7.50, 159.70 ],
+               [ 7.70, 160.0 ],
+               [ 7.90, 160.350 ],
+               [ 8.10, 160.640 ],
+               [ 8.30, 160.880 ],
+               [ 8.50, 161.120 ],
+               [ 8.70, 161.270 ],
+               [ 8.90, 161.450 ],
+               [ 9.10, 161.760 ],
+               [ 9.30, 162.120 ],
+               [ 9.50, 162.440 ],
+               [ 9.70, 162.670 ],
+               [ 9.90, 162.890 ],
+               [ 10.10, 163.120 ],
+               [ 10.30, 163.310 ],
+               [ 10.50, 163.460 ],
+               [ 10.70, 163.630 ],
+               [ 10.90, 163.890 ],
+               [ 11.10, 164.210 ],
+               [ 11.30, 164.460 ],
+               [ 11.50, 164.70 ],
+               [ 11.70, 164.990 ],
+               [ 11.90, 165.220 ],
+               [ 12.10, 165.390 ],
+               [ 12.30, 165.60 ],
+               [ 12.50, 165.850 ],
+               [ 12.70, 166.110 ],
+               [ 12.90, 166.410 ],
+               [ 13.10, 166.720 ],
+               [ 13.30, 166.990 ],
+               [ 13.50, 167.240 ],
+               [ 13.70, 167.510 ],
+               [ 13.90, 167.790 ],
+               [ 14.10, 168.090 ],
+               [ 14.30, 168.390 ],
+               [ 14.50, 168.670 ],
+               [ 14.70, 168.920 ],
+               [ 14.90, 169.180 ],
+               [ 15.10, 169.430 ],
+               [ 15.30, 169.710 ],
+               [ 15.50, 169.990 ],
+               [ 15.70, 170.270 ],
+               [ 15.90, 170.520 ],
+               [ 16.10, 170.750 ],
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+               [ 16.70, 171.540 ],
+               [ 16.90, 171.880 ],
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+               [ 17.30, 172.570 ],
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+               [ 17.70, 173.170 ],
+               [ 17.90, 173.490 ],
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+               [ 19.70, 176.540 ],
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+               [ 20.30, 177.680 ],
+               [ 20.50, 178.0 ],
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+               [ 20.90, 178.660 ],
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+               [ 21.50, 179.830 ],
+               [ 21.70, 180.180 ],
+               [ 21.90, 180.50 ],
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+               [ 22.70, 181.780 ],
+               [ 22.90, 182.130 ],
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+               [ 23.70, 183.550 ],
+               [ 23.90, 183.920 ],
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+               [ 24.30, 184.630 ],
+               [ 24.50, 184.990 ],
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+               [ 24.90, 185.730 ],
+               [ 25.10, 186.120 ],
+               [ 25.30, 186.50 ],
+               [ 25.50, 186.880 ],
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+               [ 25.90, 187.580 ],
+               [ 26.10, 187.910 ],
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+               [ 26.50, 188.570 ],
+               [ 26.70, 188.920 ],
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+               [ 40.90, 223.960 ],
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+               [ 42.70, 229.910 ],
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+               [ 298.10, 166.070 ],
+               [ 298.30, 156.420 ],
+               [ 298.50, 146.840 ],
+               [ 298.70, 137.530 ],
+               [ 298.90, 128.40 ],
+               [ 299.10, 119.530 ],
+               [ 299.30, 110.980 ],
+               [ 299.50, 102.680 ],
+               [ 299.70, 94.7960 ],
+               [ 299.90, 87.1880 ],
+               [ 300.10, 79.9950 ],
+               [ 300.30, 73.1570 ],
+               [ 300.50, 66.6880 ],
+               [ 300.70, 60.6410 ],
+               [ 300.90, 54.9270 ],
+               [ 301.10, 49.6460 ],
+               [ 301.30, 44.6920 ],
+               [ 301.50, 40.1430 ],
+               [ 301.70, 35.9260 ],
+               [ 301.90, 32.0570 ],
+               [ 302.10, 28.5340 ],
+               [ 302.30, 25.2940 ],
+               [ 302.50, 22.3890 ],
+               [ 302.70, 19.7310 ],
+               [ 302.90, 17.3620 ],
+               [ 303.10, 15.2280 ],
+               [ 303.30, 13.3160 ],
+               [ 303.50, 11.6330 ],
+               [ 303.70, 10.1180 ],
+               [ 303.90, 8.80460 ],
+               [ 304.10, 7.63340 ],
+               [ 304.30, 6.61280 ],
+               [ 304.50, 5.72970 ],
+               [ 304.70, 4.94660 ],
+               [ 304.90, 4.28810 ],
+               [ 305.10, 3.70260 ],
+               [ 305.30, 3.2110 ],
+               [ 305.50, 2.7880 ],
+               [ 305.70, 2.42080 ],
+               [ 305.90, 2.12190 ],
+               [ 306.10, 1.85410 ],
+               [ 306.30, 1.64150 ],
+               [ 306.50, 1.45420 ],
+               [ 306.70, 1.30030 ],
+               [ 306.90, 1.17430 ],
+               [ 307.10, 1.06390 ],
+               [ 307.30, 0.979550 ],
+               [ 307.50, 0.904010 ],
+               [ 307.70, 0.845030 ],
+               [ 307.90, 0.79660 ],
+               [ 308.10, 0.755170 ],
+               [ 308.30, 0.722890 ],
+               [ 308.50, 0.697840 ],
+               [ 308.70, 0.672970 ],
+               [ 308.90, 0.660320 ],
+               [ 309.10, 0.641140 ],
+               [ 309.30, 0.633320 ],
+               [ 309.50, 0.623060 ],
+               [ 309.70, 0.613690 ],
+               [ 309.90, 0.611650 ],
+               [ 310.10, 0.600530 ],
+               [ 310.30, 0.603030 ],
+               [ 310.50, 0.592670 ],
+               [ 310.70, 0.594440 ],
+               [ 310.90, 0.588280 ],
+               [ 311.10, 0.58650 ],
+               [ 311.30, 0.584850 ],
+               [ 311.50, 0.580190 ],
+               [ 311.70, 0.580870 ],
+               [ 311.90, 0.575810 ],
+               [ 312.10, 0.576360 ],
+               [ 312.30, 0.572450 ],
+               [ 312.50, 0.572260 ],
+               [ 312.70, 0.569290 ],
+               [ 312.90, 0.568670 ],
+               [ 313.10, 0.566240 ],
+               [ 313.30, 0.565490 ],
+               [ 313.50, 0.563680 ],
+               [ 313.70, 0.563130 ],
+               [ 313.90, 0.561690 ],
+               [ 314.10, 0.561870 ],
+               [ 314.30, 0.560110 ],
+               [ 314.50, 0.561130 ],
+               [ 314.70, 0.560250 ],
+               [ 314.90, 0.559430 ],
+               [ 315.10, 0.561570 ],
+               [ 315.30, 0.558950 ],
+               [ 315.50, 0.562320 ],
+               [ 315.70, 0.558850 ],
+               [ 315.90, 0.561570 ],
+               [ 316.10, 0.560020 ],
+               [ 316.30, 0.560260 ],
+               [ 316.50, 0.560250 ],
+               [ 316.70, 0.558950 ],
+               [ 316.90, 0.559450 ],
+               [ 317.10, 0.557150 ],
+               [ 317.30, 0.557710 ],
+               [ 317.50, 0.555920 ],
+               [ 317.70, 0.555360 ],
+               [ 317.90, 0.55420 ],
+               [ 318.10, 0.553260 ],
+               [ 318.30, 0.552390 ],
+               [ 318.50, 0.550650 ],
+               [ 318.70, 0.55050 ],
+               [ 318.90, 0.547670 ],
+               [ 319.10, 0.548220 ],
+               [ 319.30, 0.545410 ],
+               [ 319.50, 0.545450 ],
+               [ 319.70, 0.543291 ],
+               [ 319.90, 0.543220 ],
+               [ 320.10, 0.540860 ],
+               [ 320.30, 0.541010 ],
+               [ 320.50, 0.53930 ],
+               [ 320.70, 0.538840 ],
+               [ 320.90, 0.537640 ],
+               [ 321.10, 0.536801 ],
+               [ 321.30, 0.535940 ],
+               [ 321.50, 0.534720 ],
+               [ 321.70, 0.533840 ],
+               [ 321.90, 0.532940 ],
+               [ 322.10, 0.531550 ],
+               [ 322.30, 0.531361 ],
+               [ 322.50, 0.52910 ],
+               [ 322.70, 0.529410 ],
+               [ 322.90, 0.5260 ],
+               [ 323.10, 0.527280 ],
+               [ 323.30, 0.522470 ],
+               [ 323.50, 0.52490 ],
+               [ 323.70, 0.518720 ],
+               [ 323.90, 0.521840 ],
+               [ 324.10, 0.515860 ],
+               [ 324.30, 0.517770 ],
+               [ 324.50, 0.514120 ],
+               [ 324.70, 0.51310 ],
+               [ 324.90, 0.512920 ],
+               [ 325.10, 0.508680 ],
+               [ 325.30, 0.512270 ],
+               [ 325.50, 0.505570 ],
+               [ 325.70, 0.511180 ],
+               [ 325.90, 0.50420 ],
+               [ 326.10, 0.509150 ],
+               [ 326.30, 0.504850 ],
+               [ 326.50, 0.507360 ],
+               [ 326.70, 0.505960 ],
+               [ 350.00, 0.50 ]
+            ]
+         },
+         "r100": {
+            "some": 292.50
+         },
+         "r90": 294.880,
+         "sigma": {
+            "x": {
+               "a": 0.0,
+               "b": 0.0,
+               "c": 100.000
+            },
+            "y": {
+               "a": 0.0,
+               "b": 0.0,
+               "c": 105.678
+            }
+         },
+         "w80": 8.500
+      }],
+    "sad": [2310.0, 1930.0],
+    "source_rotation_function":
+    {
+        "intercept": 0.0,
+        "slope": 0.0
+    }
+}
+</code>
+==== Example 3: Acrylic Proton Material ====
 <code>
-"density": 1.150,
+{
-"water_equivalent_ratio": 1.0
+ "density": 1.150,
-"theta_curve": {
+ "water_equivalent_ratio": 1.0
-   "outside_domain_policy": "extend_with_copies",
+ "theta_curve": {
-   "x0": 2.0,
+    "outside_domain_policy": "extend_with_copies",
-   "x_spacing": 1.0,
+    "x0": 2.0,
-   "samples": {{
+    "x_spacing": 1.0,
-   "delta": 1.970000000000010e-005,
+    "samples": [
-   "value": 0.00294420
+    {
-}
+    "delta": 1.970000000000010e-005,
-,{
+    "value": 0.00294420
-   "delta": 1.539999999999962e-005,
+    }
-   "value": 0.00296390
+    ,{
-}
+    "delta": 1.539999999999962e-005,
-    .
+    "value": 0.00296390
-    .
+     }
-    .
+     .
-,{
+     .
-   "delta": 1.800000000000152e-006,
+     .
-   "value": 0.00312650
+    ,{
-}
+    "delta": 1.800000000000152e-006,
-,{
+    "value": 0.00312650
-   "delta": 1.600000000000039e-006,
+    }
-   "value": 0.00312830
+    ,{
-}
+    "delta": 1.600000000000039e-006,
-,{
+    "value": 0.00312830
-   "delta": 1.699999999999879e-006,
+    }
-   "value": 0.00312990
+    ,{
-}
+    "delta": 1.699999999999879e-006,
-}
+    "value": 0.00312990
+    }
+   ]
+  }
 }
 </code>
@@ Line 251: / Line 1100: @@
 ----
 <WRAP center 10%>//USR-002//</WRAP>
+<WRAP center 40%>.decimal LLC, 121 Central Park Place, Sanford, FL. 32771</WRAP>