Differences

This shows you the differences between two versions of the page.

--- dicom:userguide:thinknode [2015/09/25 13:02] – dpatenaude
+++ dicom:userguide:thinknode [2021/07/29 18:23] (current) – external edit 127.0.0.1
@@ Line 6: / Line 6: @@
 {{page>dosimetry:userguide:thinknode#python:_Overview&nofooter&noeditbtn}}
+===== Python: Calculation Request =====
+==== Posting a Dicom Patient ====
+The below example shows how to post a dicom file directory to thinknode iss and return a //rt_study//. Using the //rt_study//, sobp and pbs dose calculations can be performed. See the examples //pbs_dose_calc_from_dicom.py// and //sobp_dose_calc_from_dicom.py// from the [[https://github.com/dotdecimal/astroid-script-library|.decimal GitHub repository]] for more in depth examples of using the dicom app to call dosimetry calculations.
+<code python>
+# Copyright (c) 2015 .decimal, Inc. All rights reserved.
+# Date:     09/25/2015
+# Desc:     Post folder to thinknode and get back a dicom_study
+import os.path
+from lib import thinknode_worker as thinknode
+from lib import dicom_worker as dicom
+from lib import decimal_logging as dl
+# Get IAM ids
+iam = thinknode.authenticate(thinknode.read_config('thinknode.cfg'))
+# Create a study
+study_id = dicom.make_rt_study_from_dir(iam, 'E:/dicom/MGH_Phantom_min/')
+# Combine uploaded CT image slices into an Image_3d datatype
+study_calc = \
+  thinknode.function(iam["account_name"], 'dicom', "merge_ct_image_slices",
+      [
+          thinknode.reference(study_id)
+      ])
+study_res = thinknode.do_calculation(iam, study_calc, False)
+dl.data("Patient rt_tudy ISS ID: " + study_res)
+</code>
 ===== Python: decimal Libraries =====
@@ Line 14: / Line 46: @@
 ==== dicom_worker ====
+The dicom_worker module provides simplified function and calculation requests for common dicom tasks. This library is constantly growing as more routine tasks are programmed in python.
+Refer to the [[https://github.com/dotdecimal/astroid-script-library|.decimal GitHub repository]] for the complete module. Some basic examples of provided functionality are:
+  - Reading and posting dicom file sets or individual files
+  - Make a dicom study or patient from local files or thinknode data
+  - Pull out dicom data from thinknode data
 {{page>dosimetry:userguide:thinknode#vtk_worker&nofooter&noeditbtn&noindent}}
 {{page>dosimetry:userguide:thinknode#decimal_logging&nofooter&noeditbtn&noindent}}